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    "# Installation\n",
    "\n",
    "To install `arraylib-solve` first create `Python 3.8` environment e.g. by\n",
    "\n",
    "```\n",
    "conda create --name arraylib-env python=3.8\n",
    "conda activate arraylib-env\n",
    "```\n",
    "\n",
    "and install the package using \n",
    "\n",
    "```\n",
    "pip install arraylib-solve\n",
    "```\n",
    "\n",
    "`arraylib-solve` uses bowtie2 [[1]](#1) to align reads to the reference genome. Please ensure that bowtie2 is installed in your environment by running:\n",
    "\n",
    "```\n",
    "conda install -c bioconda bowtie2\n",
    "```\n",
    "\n",
    "<a id=\"1\">[1]</a> \n",
    "Langmead, B. and Salzberg, S.L., 2012. Fast gapped-read alignment with Bowtie 2. Nature methods, 9(4), pp.357-359."
   ]
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